WebUnderstanding the drivers of microbial diversity is an important frontier of microbial ecology, and investigating the diversity of samples from microbial ecosystems is a common step in any microbiome analysis. 'breakaway' is the premier package for statistical analysis of microbial diversity. 'breakaway' implements the latest and greatest … WebFind a cut-off for estimates relying on contiguous counts. F_test. Conduct F test of null hypothesis LB = 0 using output from betta () or betta_random () get_F_stat. Calculate F statistic under null hypothesis LB = 0 using output from betta () or betta_random () good_turing. The Good-Turing estimate of species richness.
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breakaway: Species Richness Estimation and Modeling
Webbreakaway is a package for estimating species richness. This vignette will lead you through how species richness estimation works, how to get an estimate of species richness using breakaway. We will also talk about diagnosing and fixing model misspecification. breakaway is a package for species richness estimation and modelling. As … Toggle navigation breakaway 4.7.6. Get started; Reference; Articles Introduction … alpha_estimates() alpha_estimates. apples (Data) Frequency count table of soil … WebNov 22, 2024 · breakaway: Species richness estimation with breakaway; breakaway_nof1: species richness estimation without singletons; build_frequency_count_tables: Build … WebThis function implements the Chao1 richness estimate, which is often mistakenly referred to as an index. chao1(input_data, output =NULL, answers =NULL) Arguments Value An object of class alpha_estimate, or alpha_estimatesfor phyloseqobjects Note The authors of this package strongly discourage the use of this first commercial sliced bread